Haplotype-based breeding
WebKey words: closed-line breeding, Duroc pigs, genomic relationship matrix, haplotype, SNP. INTRODUCTION In Japan, some local animal research stations have performed closed-line breeding based on estimated breeding values (EBVs) predicted by best linear unbiased prediction (BLUP) in purebred pigs (Suzuki et al. 2005; Kadowaki et al. 2012). In pig WebMar 1, 2024 · In this study, we proposed a method to automatically assign 14 haplotypes of the 7 founders to the whole-genome region of apple parental and breeding populations by combining multiple algorithms...
Haplotype-based breeding
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WebHaplotype-based breeding, a recent promising breeding approach to develop tailor-made crop varieties, deals with identification of superior haplotypes and their deployment in … WebSep 17, 2024 · In this paper, we review the performance of various hidden Markov model-based imputation methods in animal breeding populations. Traditionally, pedigree and heuristic-based imputation methods have been used for imputation in large animal populations due to their computational efficiency, scalability, and accuracy. Recent …
WebRapid Identification of Alleles at the Soybean Maturity Gene E3 using genotyping by Sequencing and a Haplotype-Based Approach ... Subsequent tests on two genotypes per haplotype (PCR test for a previously reported allele, sequencing entire gene), and validation on a subset of lines, allowed to determine that each of these corresponded to a ... WebTraits related to flowering time are the most promising agronomic traits that directly impact the seed yield and oil quality of rapeseed (Brassica napus L.). Developing early flowering and maturity rapeseed varieties is an important breeding objective in B. napus. Many studies have reported on days to flowering, but few have reported on budding, bolting, …
WebHaplotype-based breeding, a recent promising breeding approach to develop tailor-made crop varieties, deals with identification of superior haplotypes and their deployment in breeding programmes. In this context, whole genome re … WebUsing SNP chip data, haplotype was defined in three different ways based on 1) the number of SNPs included, 2) length of haplotypes (bp), and 3) agglomerative hierarchical clustering based on LD. To compare the methods in parallel, haplotypes defined by all methods were set to have comparable sizes; 5, 10, 20 or 50 SNPs on average per …
WebTrait dissection and molecular breeding in eucalypts currently relies on biallelic single-nucleotide polymorphism (SNP) markers. These markers fail to capture the large amount of haplotype diversity in these species, and thus multi-allelic markers are required. We aimed to develop a gene-based haplotype mining panel for Eucalyptus species.
WebNov 1, 2024 · The haplotype-based approach was, on average, the most informative one in terms of the phenotypic variance explained by significant SNPs (R 2), as this was the case for HTM, ... The efficiency of barley … ihg atheneWebApr 10, 2024 · A haplotype refers to a set of DNA variants along a single chromosome that tend to be inherited together. They tend to be inherited together because they are close … ihg ashfordihg att discountWebNational Center for Biotechnology Information ihg atlantic cityWebA number of haplotype-based statistics have been implemented by Szpiech and Hernandez (2014) in the program selscan. Extended haplotype homozygosity. The … ihg athens hotelsWebhaplotype: [noun] a group of alleles of different genes (as of the major histocompatibility complex) on a single chromosome that are closely enough linked to be inherited usually … ihg at west pointWebJan 15, 2024 · In the present review, we have summarized the technological aspects, opportunities, and limitations associated with speed breeding. The application of speed breeding such as mapping population development, haplotype-based breeding, transgenic breeding, and genome-edited line advancement has also been discussed. is the polar bear an apex predator